Video walkthrough

FZD1/KLF10-hsa-miR-4762-5p/miR-224-3p-circular RNAs axis as prognostic biomarkers and therapeutic targets for glioblastoma: a comprehensive report

Overview 4:08 CC AI

paperi.ai
0:00 / 0:00

Fang Jia, Lixia Zhang, Zhengye Jiang, Guowei Tan, Zhanxiang Wang

Glioblastoma is often rapidly fatal, yet this study points to two molecular signals whose levels were linked with how long patients survived. The bigger promise is a connected warning system, not a single marker.

Abstract

Background The circular RNA (circRNA) plays a vital role in the pathogenesis of tumors as a competitive endogenous RNA (ceRNA). Given the high aggressiveness and fatality rate of glioblastoma (GBM) as well as poor prognosis, it is necessary to construct a circRNA-related ceRNA network for further studies on the mechanism of GBM and identify possible biomarkers as well as therapeutic drugs. Methods Three datasets from the gene expression omnibus (GEO) database were downloaded to distinguish differential circRNAs, microRNAs, and messenger RNAs respectively in GBM. With the help of GEPIA2, circBank, CSCD, TargetScan, miRDB, and miRTarBase databases, we established a circRNAs-related ceRNA network in GBM. Functional enrichments were employed to profile the most relevant mRNAs to indirectly clarify the mechanisms of the ceRNA network. Based on the expression profile data and survival information of GBM patients from the GEO and the cancer genome atlas (TCGA) databases, we performed survival analysis to select prognostic mRNAs and constructed a novel circRNA-miRNA-mRNA central regulatory subnetwork. The DGIdb database was used to find potential drug–gene interactions. Results The datasets obtained from the GEO and TCGA databases were analyzed, and 504 differentially expressed mRNAs (DEmRNAs), 71 differentially expressed microRNAs (DEmiRNAs), and 270 differentially expressed circRNAs (DEcircRNAs) were screened out. The novel ceRNA regulatory network included 22 circRNAs, 11 miRNAs, and 15 mRNAs. FZD1 and KLF10 were significantly correlated with the overall survival rate of patients with GBM (P < 0.05). The final survival subnetwork contained six circRNAs, two miRNAs, and two mRNAs. Two small-molecule compounds and one antibody could be used as therapeutic drugs for GBM. Interestingly, the Wnt signaling pathway appeared in both KEGG and GO functional terms. Conclusions Results of this study demonstrate that FZD1 and KLF10 may exert regulatory functions in GBM, and the ceRNA-mediated network could be a therapeutic strategy for GBM. Keywords Glioblastoma, ceRNA network, DEGs, Prognostic biomarker

Transcript

Glioblastoma is often rapidly fatal, yet this study points to two molecular signals whose levels were linked with how long patients survived. The bigger promise is a connected warning system, not a single marker. Glioblastoma is the most frequent primary malignant brain tumor in adults and is often rapidly fatal.

Its complications impose a substantial economic burden and medical strain around the world. Despite advances in current treatments, their impact on glioblastoma remains limited, possibly because its causes and workings are not understood well enough.

More study is needed to find markers that can predict prognosis and treatment outcomes. So the study looked for a connected system of signals. Like tracing messages through a city’s roads, it linked circular RNA, microRNA, and messenger RNA to build a network in glioblastoma.

The network was then compared with information about how patients survived, so the signals most related to prognosis could be selected. Possible drug–gene interactions were also searched for. The network was narrowed by looking for signals that appeared consistently across separate data sources.

The results included overlapping microRNAs and messenger RNAs linked to their targets. Using these databases, the researchers constructed a competing endogenous RNA network connecting circular RNAs, microRNAs, and messenger RNAs for the study's analysis.

The resulting interactions included seventeen pairs between eleven circular RNAs and fifteen messenger RNAs, plus twenty-four pairs involving twenty-two circular RNAs and eleven microRNAs. This network maps how circular genetic messages, small regulatory messages, and protein-making instructions may influence one another.

Its many connecting lines point to a coordinated shift across these layers, rather than isolated changes in individual molecules. But the key question was whether any signals in this network were linked with overall survival. Two of the fifteen messenger RNAs were significantly correlated with overall survival in glioblastoma.

Those two were FZD1 and KLF10, and both were inversely correlated with overall survival. The study also examined how they related to several common immune cell types in the glioblastoma environment. The survival link was checked against results from other studies.

High expression of FZD1 was significantly associated with poor overall survival, and high KLF10 expression was also significantly correlated with inferior overall survival. The researchers found no significant bias when they performed the funnel-plot analysis on these included studies in their overall meta-analysis.

Here is the important caution: the tumor samples were not evaluated for glioblastoma subtypes, which may have influenced their expression profiles and prognosis. The survival analyses also relied on online databases with automatic assessment of confounding factors.

The network and possible drug links rely heavily on computer tools and databases. Their accuracy still needs to be tested by laboratory experiments and clinical trials. The study concludes that FZD1 and KLF10 may have regulatory functions in glioblastoma, and that the network controlled by these signals could become a treatment strategy.

The study concludes that FZD1 and KLF10 may regulate glioblastoma biology, and that the competing endogenous RNA network could represent a therapeutic strategy. The study identifies FZD1 and KLF10 as survival-linked signals inside a larger regulatory network, while stressing that laboratory experiments and clinical trials are still needed before prediction or treatment can be trusted.

A derivative work by Paperi · AI-generated script, voice and captions · pages and figures unaltered

Made with Paperi.

Drop in a research PDF — get a narrated video walkthrough like this one, with highlights that follow the narration. Free to start.

Try it with your paper →

More in Biochemistry, Genetics and Molecular Biology

Comprehensive analysis regarding the prognostic significance of downregulated ferroptosis-related gene AKR1C2 in gastric cancer and its underlying roles in immune response 4:01

Comprehensive analysis regarding the prognostic significance of downregulated ferroptosis-related gene AKR1C2 in gastric cancer and its underlying roles in immune response

In stomach cancer, a gene involved in a form of cell death appears in smaller amounts than usual. The surprising part is that patients with more of this gene tended to have better outcomes.

Tetra-O-methyl-nordihydroguaiaretic acid inhibits energy metabolism and synergistically induces anticancer effects with temozolomide on LN229 glioblastoma tumors implanted in mice while preventing obesity in normal mice that consume high-fat diets 5:36

Tetra-O-methyl-nordihydroguaiaretic acid inhibits energy metabolism and synergistically induces anticancer effects with temozolomide on LN229 glioblastoma tumors implanted in mice while preventing obesity in normal mice that consume high-fat diets

What if a cancer treatment could attack a tumor by disrupting its energy supply, and work more strongly when paired with an existing drug? In mice, that is what this study found, while the same substance also limited weight gain on a high-fat diet.

Impaired bisecting GlcNAc reprogrammed M1 polarization of macrophage 3:18

Impaired bisecting GlcNAc reprogrammed M1 polarization of macrophage

Immune cells can help attack a tumor or help it grow. This study suggests that a tiny sugar pattern on their surface helps decide which role they take, and removing it pushes them toward attack.

All 36 papers in Biochemistry, Genetics and Molecular Biology →