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Selection and validation of reference genes for RT-qPCR-based analyses of Anastatus japonicus Ashmead (Hymenoptera: Helicopteridae)

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Zixin Liu, Junjiang Xiao, Yue Xia, Qifeng Wu, Can Zhao, Dunsong Li

A tiny measurement choice can make a wasp gene look far more active than it really is. For a useful pest-control insect, that could send future research in the wrong direction.

Abstract

RT-qPCR remains a vital approach for molecular biology studies aimed at quantifying gene expression in a range of physiological or pathological settings. However, the use of appropriate reference genes is essential to attain meaningful RT-qPCR results. Anastatus japonicus Ashmead (Hymenoptera: Helicopteridae) is an important egg parasitoid wasp and natural enemy of fruit bugs and forest caterpillars. While recent transcriptomic studies have analyzed gene expression profiles in A. japonicus specimens, offering a robust foundation for functional research focused on this parasitoid, no validated A. japonicus reference genes have yet been established, hampering further research efforts. Accordingly, this study sought to address this issue by screening for the most stable internal reference genes in A. japonicus samples to permit reliable RT-qPCR analyses. The utility of eight candidate reference genes (ACTIN, TATA, GAPDH, TUB, RPL13, RPS6, EF1α, RPS3a) was assessed under four different conditions by comparing developmental stages (larvae, pupae, adults), tissues (abdomen, chest, head), sex (male or female adults), or diapause states (diapause induction for 25, 35, 45, or 55 days, or diapause termination). RefFinder was used to calculate gene stability based on the integration of four algorithms (BestKeeper, Normfinder, geNorm, and ΔCt method) to determine the optimal RT-qPCR reference gene. Based on this approach, RPS6 and RPL13 were found to be the most reliable reference genes when assessing different stages of development, while ACTIN and EF1α were optimal when comparing adults of different sexes, RPL13 and EF1α were optimal when analyzing different tissues, and TATA and ACTIN were optimal for different diapause states. These results provide a valuable foundation for future RT-qPCR analyses of A. japonicus gene expression and function under a range of experimental conditions.

Transcript

A tiny measurement choice can make a wasp gene look far more active than it really is. For a useful pest-control insect, that could send future research in the wrong direction. Anastatus japonicus is an important egg parasitoid wasp and a natural enemy of fruit bugs and forest caterpillars.

In commercial settings, it is used as a biological control agent. But moderate springtime temperatures induce a resting state that delays adult emergence and interferes with the timing of pest control, limiting the wasp’s value. Individuals in this state also survive storage better.

To understand what this wasp is doing, researchers measure which genes are more or less active. But those measurements need a steady yardstick. It is like weighing fruit on a scale whose reading changes every time the fruit moves: the result may reflect the scale, not the fruit.

No validated yardsticks had yet been established for Anastatus japonicus, hampering further research. The study therefore searched for the most stable internal reference genes so gene activity could be measured reliably. Eight commonly used reference genes were evaluated to establish their value when normalizing gene-activity measurements.

They had been widely used because they were considered to have uniform expression. Their stability was compared across sex, tissue type, developmental stage, and diapause state. The goal was to define which reference genes were most appropriate across different experimental conditions.

For comparisons across developmental stages, RPS6 and RPL13 were the most stable reference genes. The overall ranking placed RPL13 and RPS6 first. The combined analysis therefore suggested that RPL13 and RPS6 were the most appropriate choices when analyzing different stages of development.

The best choices differed markedly between sample types, supporting the use of more than one reference gene when normalizing gene-activity data. The recommended pairs were RPL13 and RPS6 for developmental stages, ACTIN and RPS6 for tissues, RPL13 and EF1α for sexes, and ACTIN and TATA for diapause treatments.

A gene linked to insect dormancy changes sharply over time, rising from the ordinary state to a peak around day fifty-five, then dropping when dormancy ends. That makes it a useful check that the study’s gene-measuring procedure is capturing real biological change.

No one reference gene was optimal under all conditions. On average, the combination of RPS3a and RPL13 was most appropriate across the tested conditions. For real research on this wasp, the practical lesson is to choose the pair for the question: development, tissue, diapause, or sex.

That makes future measurements of gene function more reliable. There is no single reliable yardstick for every comparison. Choosing a pair suited to the wasp’s stage, tissue, sex, or resting state makes gene measurements more trustworthy—and helps researchers understand how this natural pest controller works.

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